2019b

Alphabetical list of available ULHPC software belonging to the '2019b' software set. To load a software of this set, use:

# Eventually: resif-load-swset-[...]
module load <category>/<software>[/<version>]

Software Architectures Clusters Category Description
ABAQUS 2018 broadwell, skylake iris CFD/Finite element modelling Finite Element Analysis software for modeling, visualization and best-in-class implicit and explicit dynamics FEA.
ACTC 1.1 broadwell, skylake iris Libraries ACTC converts independent triangles into triangle strips or fans.
ANSYS 19.4 broadwell, skylake iris Utilities ANSYS simulation software enables organizations to confidently predict how their products will operate in the real world. We believe that every product is a promise of something greater.
ANSYS 21.1 broadwell, skylake iris Utilities ANSYS simulation software enables organizations to confidently predict how their products will operate in the real world. We believe that every product is a promise of something greater.
ASE 3.19.0 broadwell, skylake iris Chemistry ASE is a python package providing an open source Atomic Simulation Environment in the Python scripting language. From version 3.20.1 we also include the ase-ext package, it contains optional reimplementations in C of functions in ASE. ASE uses it automatically when installed.
ATK 2.34.1 broadwell, skylake iris Visualisation ATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications.
Advisor 2019_update5 broadwell, skylake iris Performance measurements Vectorization Optimization and Thread Prototyping - Vectorize & thread code or performance “dies” - Easy workflow + data + tips = faster code faster - Prioritize, Prototype & Predict performance gain
Anaconda3 2020.02 broadwell, skylake iris Programming Languages Built to complement the rich, open source Python community, the Anaconda platform provides an enterprise-ready data analytics platform that empowers companies to adopt a modern open data science analytics architecture.
ArmForge 20.0.3 broadwell, skylake iris Utilities The industry standard development package for C, C++ and Fortran high performance code on Linux. Forge is designed to handle the complex software projects - including parallel, multiprocess and multithreaded code. Arm Forge combines an industry-leading debugger, Arm DDT, and an out-of-the-box-ready profiler, Arm MAP.
ArmReports 20.0.3 broadwell, skylake iris Utilities Arm Performance Reports - a low-overhead tool that produces one-page text and HTML reports summarizing and characterizing both scalar and MPI application performance. Arm Performance Reports runs transparently on optimized production-ready codes by adding a single command to your scripts, and provides the most effective way to characterize and understand the performance of HPC application runs.
Armadillo 9.900.1 broadwell, skylake iris Numerical libraries Armadillo is an open-source C++ linear algebra library (matrix maths) aiming towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions.
Arrow 0.16.0 broadwell, skylake iris Data processing Apache Arrow (incl. PyArrow Python bindings)), a cross-language development platform for in-memory data.
Aspera-CLI 3.9.1 broadwell, skylake iris Utilities IBM Aspera Command-Line Interface (the Aspera CLI) is a collection of Aspera tools for performing high-speed, secure data transfers from the command line. The Aspera CLI is for users and organizations who want to automate their transfer workflows.
Autoconf 2.69 broadwell, skylake, gpu iris Development Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls.
Automake 1.16.1 broadwell, skylake, gpu iris Development Automake: GNU Standards-compliant Makefile generator
Autotools 20180311 broadwell, skylake, gpu iris Development This bundle collect the standard GNU build tools: Autoconf, Automake and libtool
BEDTools 2.29.2 broadwell, skylake iris Biology BEDTools: a powerful toolset for genome arithmetic. The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM.
BLAST+ 2.9.0 broadwell, skylake iris Biology Basic Local Alignment Search Tool, or BLAST, is an algorithm for comparing primary biological sequence information, such as the amino-acid sequences of different proteins or the nucleotides of DNA sequences.
BWA 0.7.17 broadwell, skylake iris Biology Burrows-Wheeler Aligner (BWA) is an efficient program that aligns relatively short nucleotide sequences against a long reference sequence such as the human genome.
BamTools 2.5.1 broadwell, skylake iris Biology BamTools provides both a programmer's API and an end-user's toolkit for handling BAM files.
Bazel 0.26.1 gpu iris Development Bazel is a build tool that builds code quickly and reliably. It is used to build the majority of Google's software.
Bazel 0.29.1 gpu iris Development Bazel is a build tool that builds code quickly and reliably. It is used to build the majority of Google's software.
BioPerl 1.7.2 broadwell, skylake iris Biology Bioperl is the product of a community effort to produce Perl code which is useful in biology. Examples include Sequence objects, Alignment objects and database searching objects.
Bison 3.3.2 broadwell, skylake, gpu iris Programming Languages Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.
Boost 1.71.0 broadwell, skylake iris Development Boost provides free peer-reviewed portable C++ source libraries.
Bowtie2 2.3.5.1 broadwell, skylake iris Biology Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.
CGAL 4.14.1 broadwell, skylake iris Numerical libraries The goal of the CGAL Open Source Project is to provide easy access to efficient and reliable geometric algorithms in the form of a C++ library.
CMake 3.15.3 broadwell, skylake, gpu iris Development CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.
CPLEX 12.10 broadwell, skylake iris Mathematics IBM ILOG CPLEX Optimizer's mathematical programming technology enables analytical decision support for improving efficiency, reducing costs, and increasing profitability.
CRYSTAL 17 broadwell, skylake iris Chemistry The CRYSTAL package performs ab initio calculations of the ground state energy, energy gradient, electronic wave function and properties of periodic systems. Hartree-Fock or Kohn- Sham Hamiltonians (that adopt an Exchange-Correlation potential following the postulates of Density-Functional Theory) can be used.
CUDA 10.1.243 gpu iris System-level software CUDA (formerly Compute Unified Device Architecture) is a parallel computing platform and programming model created by NVIDIA and implemented by the graphics processing units (GPUs) that they produce. CUDA gives developers access to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs.
Clang 9.0.1 broadwell, skylake, gpu iris Compilers C, C++, Objective-C compiler, based on LLVM. Does not include C++ standard library -- use libstdc++ from GCC.
CubeGUI 4.4.4 broadwell, skylake iris Performance measurements Cube, which is used as performance report explorer for Scalasca and Score-P, is a generic tool for displaying a multi-dimensional performance space consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree can be collapsed or expanded to achieve the desired level of granularity. This module provides the Cube graphical report explorer.
CubeLib 4.4.4 broadwell, skylake iris Performance measurements Cube, which is used as performance report explorer for Scalasca and Score-P, is a generic tool for displaying a multi-dimensional performance space consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree can be collapsed or expanded to achieve the desired level of granularity. This module provides the Cube general purpose C++ library component and command-line tools.
CubeWriter 4.4.3 broadwell, skylake iris Performance measurements Cube, which is used as performance report explorer for Scalasca and Score-P, is a generic tool for displaying a multi-dimensional performance space consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree can be collapsed or expanded to achieve the desired level of granularity. This module provides the Cube high-performance C writer library component.
DB 18.1.32 broadwell, skylake iris Utilities Berkeley DB enables the development of custom data management solutions, without the overhead traditionally associated with such custom projects.
DBus 1.13.12 broadwell, skylake iris Development D-Bus is a message bus system, a simple way for applications to talk to one another. In addition to interprocess communication, D-Bus helps coordinate process lifecycle; it makes it simple and reliable to code a "single instance" application or daemon, and to launch applications and daemons on demand when their services are needed.
DMTCP 2.5.2 broadwell, skylake iris Utilities DMTCP is a tool to transparently checkpoint the state of multiple simultaneous applications, including multi-threaded and distributed applications. It operates directly on the user binary executable, without any Linux kernel modules or other kernel modifications.
Dakota 6.11.0 broadwell, skylake iris Mathematics The Dakota project delivers both state-of-the-art research and robust, usable software for optimization and UQ. Broadly, the Dakota software's advanced parametric analyses enable design exploration, model calibration, risk analysis, and quantification of margins and uncertainty with computational models."
Doxygen 1.8.16 broadwell, skylake, gpu iris Development Doxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.
ELPA 2019.11.001 broadwell iris Mathematics Eigenvalue SoLvers for Petaflop-Applications .
EasyBuild 4.3.0 broadwell, skylake, gpu iris Utilities EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.
EasyBuild 4.3.3 broadwell, skylake, gpu iris Utilities EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.
Eigen 3.3.7 broadwell, skylake, gpu iris Mathematics Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms.
Elk 6.3.2 broadwell, skylake iris Physics An all-electron full-potential linearised augmented-plane wave (FP-LAPW) code with many advanced features. Written originally at Karl-Franzens-Universität Graz as a milestone of the EXCITING EU Research and Training Network, the code is designed to be as simple as possible so that new developments in the field of density functional theory (DFT) can be added quickly and reliably.
FDS 6.7.1 broadwell, skylake iris Physics Fire Dynamics Simulator (FDS) is a large-eddy simulation (LES) code for low-speed flows, with an emphasis on smoke and heat transport from fires.
FFTW 3.3.8 broadwell, skylake, gpu iris Numerical libraries FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
FFmpeg 4.2.1 broadwell, skylake, gpu iris Visualisation A complete, cross-platform solution to record, convert and stream audio and video.
FLTK 1.3.5 broadwell, skylake iris Visualisation FLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL and its built-in GLUT emulation.
FastQC 0.11.9 broadwell, skylake iris Biology FastQC is a quality control application for high throughput sequence data. It reads in sequence data in a variety of formats and can either provide an interactive application to review the results of several different QC checks, or create an HTML based report which can be integrated into a pipeline.
FriBidi 1.0.5 broadwell, skylake, gpu iris Programming Languages The Free Implementation of the Unicode Bidirectional Algorithm.
GCC 8.3.0 broadwell, skylake, gpu iris Compilers The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).
GCCcore 8.3.0 broadwell, skylake, gpu iris Compilers The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).
GDAL 3.0.2 broadwell, skylake, gpu iris Data processing GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing.
GDB 9.1 broadwell, skylake iris Debugging The GNU Project Debugger
GEOS 3.8.0 broadwell, skylake, gpu iris Mathematics GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS)
GLPK 4.65 broadwell, skylake iris Utilities The GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library.
GLib 2.62.0 broadwell, skylake, gpu iris Visualisation GLib is one of the base libraries of the GTK+ project
GMP 6.1.2 broadwell, skylake, gpu iris Mathematics GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers.
GObject-Introspection 1.63.1 broadwell, skylake iris Development GObject introspection is a middleware layer between C libraries (using GObject) and language bindings. The C library can be scanned at compile time and generate a metadata file, in addition to the actual native C library. Then at runtime, language bindings can read this metadata and automatically provide bindings to call into the C library.
GPAW-setups 0.9.20000 broadwell, skylake iris Chemistry PAW setup for the GPAW Density Functional Theory package. Users can install setups manually using 'gpaw install-data' or use setups from this package. The versions of GPAW and GPAW-setups can be intermixed.
GPAW 20.1.0 broadwell, skylake iris Chemistry GPAW is a density-functional theory (DFT) Python code based on the projector-augmented wave (PAW) method and the atomic simulation environment (ASE). It uses real-space uniform grids and multigrid methods or atom-centered basis-functions.
GROMACS 2019.4 broadwell, skylake iris Biology GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. This is a CPU only build, containing both MPI and threadMPI builds for both single and double precision. It also contains the gmxapi extension for the single precision MPI build.
GROMACS 2019.6 broadwell, skylake iris Biology GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. This is a CPU only build, containing both MPI and threadMPI builds for both single and double precision. It also contains the gmxapi extension for the single precision MPI build.
GROMACS 2020 broadwell, skylake iris Biology GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. This is a CPU only build, containing both MPI and threadMPI builds for both single and double precision. It also contains the gmxapi extension for the single precision MPI build.
GSL 2.6 broadwell, skylake, gpu iris Numerical libraries The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.
GTK+ 3.24.13 broadwell, skylake iris Visualisation GTK+ is the primary library used to construct user interfaces in GNOME. It provides all the user interface controls, or widgets, used in a common graphical application. Its object-oriented API allows you to construct user interfaces without dealing with the low-level details of drawing and device interaction.
Gdk-Pixbuf 2.38.2 broadwell, skylake iris Visualisation The Gdk Pixbuf is a toolkit for image loading and pixel buffer manipulation. It is used by GTK+ 2 and GTK+ 3 to load and manipulate images. In the past it was distributed as part of GTK+ 2 but it was split off into a separate package in preparation for the change to GTK+ 3.
Ghostscript 9.50 broadwell, skylake, gpu iris Utilities Ghostscript is a versatile processor for PostScript data with the ability to render PostScript to different targets. It used to be part of the cups printing stack, but is no longer used for that.
Go 1.14.1 broadwell, skylake iris Compilers Go is an open source programming language that makes it easy to build simple, reliable, and efficient software.
Guile 1.8.8 broadwell, skylake iris Programming Languages Guile is a programming language, designed to help programmers create flexible applications that can be extended by users or other programmers with plug-ins, modules, or scripts.
Guile 2.2.4 broadwell, skylake iris Programming Languages Guile is a programming language, designed to help programmers create flexible applications that can be extended by users or other programmers with plug-ins, modules, or scripts.
Gurobi 9.0.0 broadwell, skylake iris Mathematics The Gurobi Optimizer is a state-of-the-art solver for mathematical programming. The solvers in the Gurobi Optimizer were designed from the ground up to exploit modern architectures and multi-core processors, using the most advanced implementations of the latest algorithms.
HDF5 1.10.5 broadwell, skylake, gpu iris Data processing HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data.
HTSlib 1.10.2 broadwell, skylake iris Biology A C library for reading/writing high-throughput sequencing data. This package includes the utilities bgzip and tabix
HarfBuzz 2.6.4 broadwell, skylake iris Visualisation HarfBuzz is an OpenType text shaping engine.
Harminv 1.4.1 broadwell, skylake iris Mathematics Harminv is a free program (and accompanying library) to solve the problem of harmonic inversion - given a discrete-time, finite-length signal that consists of a sum of finitely-many sinusoids (possibly exponentially decaying) in a given bandwidth, it determines the frequencies, decay constants, amplitudes, and phases of those sinusoids.
Horovod 0.19.1 broadwell, skylake, gpu iris Utilities Horovod is a distributed training framework for TensorFlow.
ICU 64.2 broadwell, skylake, gpu iris Libraries ICU is a mature, widely used set of C/C++ and Java libraries providing Unicode and Globalization support for software applications.
ImageMagick 7.0.9-5 broadwell, skylake, gpu iris Visualisation ImageMagick is a software suite to create, edit, compose, or convert bitmap images
Inspector 2019_update5 broadwell, skylake iris Utilities Intel Inspector XE is an easy to use memory error checker and thread checker for serial and parallel applications
JasPer 2.0.14 broadwell, skylake, gpu iris Visualisation The JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.
Java 1.8.0_241 broadwell, skylake, gpu iris Programming Languages Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.
Java 11.0.2 broadwell, skylake, gpu iris Programming Languages Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.
Java 13.0.2 broadwell, skylake, gpu iris Programming Languages Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.
Jellyfish 2.3.0 broadwell, skylake iris Biology Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA.
JsonCpp 1.9.3 broadwell, skylake, gpu iris Libraries JsonCpp is a C++ library that allows manipulating JSON values, including serialization and deserialization to and from strings. It can also preserve existing comment in unserialization/serialization steps, making it a convenient format to store user input files.
Julia 1.4.1 broadwell, skylake iris Programming Languages Julia is a high-level, high-performance dynamic programming language for numerical computing
Keras 2.3.1 gpu iris Mathematics Keras is a deep learning API written in Python, running on top of the machine learning platform TensorFlow.
LAME 3.100 broadwell, skylake, gpu iris Data processing LAME is a high quality MPEG Audio Layer III (MP3) encoder licensed under the LGPL.
LLVM 9.0.0 broadwell, skylake, gpu iris Compilers The LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation ("LLVM IR"). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler) to use LLVM as an optimizer and code generator.
LLVM 9.0.1 broadwell, skylake, gpu iris Compilers The LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation ("LLVM IR"). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler) to use LLVM as an optimizer and code generator.
LMDB 0.9.24 broadwell, skylake, gpu iris Libraries LMDB is a fast, memory-efficient database. With memory-mapped files, it has the read performance of a pure in-memory database while retaining the persistence of standard disk-based databases.
LibTIFF 4.0.10 broadwell, skylake, gpu iris Libraries tiff: Library and tools for reading and writing TIFF data files
LittleCMS 2.9 broadwell, skylake, gpu iris Visualisation Little CMS intends to be an OPEN SOURCE small-footprint color management engine, with special focus on accuracy and performance.
Lua 5.1.5 broadwell, skylake iris Programming Languages Lua is a powerful, fast, lightweight, embeddable scripting language. Lua combines simple procedural syntax with powerful data description constructs based on associative arrays and extensible semantics. Lua is dynamically typed, runs by interpreting bytecode for a register-based virtual machine, and has automatic memory management with incremental garbage collection, making it ideal for configuration, scripting, and rapid prototyping.
M4 1.4.18 broadwell, skylake, gpu iris Development GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.
MATLAB 2019b broadwell, skylake iris Mathematics MATLAB is a high-level language and interactive environment that enables you to perform computationally intensive tasks faster than with traditional programming languages such as C, C++, and Fortran.
MATLAB 2020a broadwell, skylake iris Mathematics MATLAB is a high-level language and interactive environment that enables you to perform computationally intensive tasks faster than with traditional programming languages such as C, C++, and Fortran.
METIS 5.1.0 broadwell, skylake iris Mathematics METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes.
MPFR 4.0.2 broadwell, skylake, gpu iris Mathematics The MPFR library is a C library for multiple-precision floating-point computations with correct rounding.
Mako 1.1.0 broadwell, skylake, gpu iris Development A super-fast templating language that borrows the best ideas from the existing templating languages
Mathematica 12.0.0 broadwell, skylake iris Mathematics Mathematica is a computational software program used in many scientific, engineering, mathematical and computing fields.
Maven 3.6.3 broadwell, skylake iris Development Binary maven install, Apache Maven is a software project management and comprehension tool. Based on the concept of a project object model (POM), Maven can manage a project's build, reporting and documentation from a central piece of information.
Meep 1.4.3 broadwell, skylake iris Physics Meep (or MEEP) is a free finite-difference time-domain (FDTD) simulation software package developed at MIT to model electromagnetic systems.
Mesa 19.1.7 broadwell, skylake, gpu iris Visualisation Mesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics.
Mesa 19.2.1 broadwell, skylake, gpu iris Visualisation Mesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics.
Meson 0.51.2 broadwell, skylake, gpu iris Utilities Meson is a cross-platform build system designed to be both as fast and as user friendly as possible.
Mesquite 2.3.0 broadwell, skylake iris Mathematics Mesh-Quality Improvement Library
NAMD 2.13 broadwell, skylake iris Chemistry NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems.
NASM 2.14.02 broadwell, skylake, gpu iris Programming Languages NASM: General-purpose x86 assembler
NCCL 2.4.8 gpu iris Libraries The NVIDIA Collective Communications Library (NCCL) implements multi-GPU and multi-node collective communication primitives that are performance optimized for NVIDIA GPUs.
NLopt 2.6.1 broadwell, skylake, gpu iris Numerical libraries NLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms.
NSPR 4.21 broadwell, skylake iris Libraries Netscape Portable Runtime (NSPR) provides a platform-neutral API for system level and libc-like functions.
NSS 3.45 broadwell, skylake iris Libraries Network Security Services (NSS) is a set of libraries designed to support cross-platform development of security-enabled client and server applications.
Ninja 1.9.0 broadwell, skylake, gpu iris Utilities Ninja is a small build system with a focus on speed.
OPARI2 2.0.5 broadwell, skylake iris Performance measurements OPARI2, the successor of Forschungszentrum Juelich's OPARI, is a source-to-source instrumentation tool for OpenMP and hybrid codes. It surrounds OpenMP directives and runtime library calls with calls to the POMP2 measurement interface.
OTF2 2.2 broadwell, skylake iris Performance measurements The Open Trace Format 2 is a highly scalable, memory efficient event trace data format plus support library. It is the new standard trace format for Scalasca, Vampir, and TAU and is open for other tools.
OpenBLAS 0.3.7 broadwell, skylake, gpu iris Numerical libraries OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.
OpenCV 4.2.0 broadwell, skylake iris Visualisation OpenCV (Open Source Computer Vision Library) is an open source computer vision and machine learning software library. OpenCV was built to provide a common infrastructure for computer vision applications and to accelerate the use of machine perception in the commercial products. Includes extra modules for OpenCV from the contrib repository.
OpenFOAM-Extend 4.1-20200408 broadwell, skylake iris CFD/Finite element modelling OpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics and electromagnetics.
OpenFOAM v1912 broadwell, skylake iris CFD/Finite element modelling OpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics and electromagnetics.
OpenMPI 3.1.4 broadwell, skylake, gpu iris MPI The Open MPI Project is an open source MPI-3 implementation.
PAPI 6.0.0 broadwell, skylake iris Performance measurements PAPI provides the tool designer and application engineer with a consistent interface and methodology for use of the performance counter hardware found in most major microprocessors. PAPI enables software engineers to see, in near real time, the relation between software performance and processor events. In addition Component PAPI provides access to a collection of components that expose performance measurement opportunites across the hardware and software stack.
PCRE2 10.33 broadwell, skylake iris Development The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.
PCRE 8.43 broadwell, skylake, gpu iris Development The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.
PDT 3.25 broadwell, skylake iris Performance measurements Program Database Toolkit (PDT) is a framework for analyzing source code written in several programming languages and for making rich program knowledge accessible to developers of static and dynamic analysis tools. PDT implements a standard program representation, the program database (PDB), that can be accessed in a uniform way through a class library supporting common PDB operations.
PGI 19.10 broadwell, skylake iris Compilers C, C++ and Fortran compilers from The Portland Group - PGI
PLUMED 2.5.3 broadwell, skylake iris Chemistry PLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C++, can be easily interfaced with both fortran and C/C++ codes.
PROJ 6.2.1 broadwell, skylake, gpu iris Libraries Program proj is a standard Unix filter function which converts geographic longitude and latitude coordinates into cartesian coordinates
Pango 1.44.7 broadwell, skylake iris Visualisation Pango is a library for laying out and rendering of text, with an emphasis on internationalization. Pango can be used anywhere that text layout is needed, though most of the work on Pango so far has been done in the context of the GTK+ widget toolkit. Pango forms the core of text and font handling for GTK+-2.x.
ParMETIS 4.0.3 broadwell, skylake iris Mathematics ParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured graphs, meshes, and for computing fill-reducing orderings of sparse matrices. ParMETIS extends the functionality provided by METIS and includes routines that are especially suited for parallel AMR computations and large scale numerical simulations. The algorithms implemented in ParMETIS are based on the parallel multilevel k-way graph-partitioning, adaptive repartitioning, and parallel multi-constrained partitioning schemes.
ParMGridGen 1.0 broadwell, skylake iris Mathematics ParMGridGen is an MPI-based parallel library that is based on the serial package MGridGen, that implements (serial) algorithms for obtaining a sequence of successive coarse grids that are well-suited for geometric multigrid methods.
ParaView 5.6.2 broadwell, skylake iris Visualisation ParaView is a scientific parallel visualizer.
Perl 5.30.0 broadwell, skylake, gpu iris Programming Languages Larry Wall's Practical Extraction and Report Language This is a minimal build without any modules. Should only be used for build dependencies.
Pillow 6.2.1 broadwell, skylake, gpu iris Visualisation Pillow is the 'friendly PIL fork' by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lundh and Contributors.
PyTorch 1.4.0 broadwell, skylake iris Development Tensors and Dynamic neural networks in Python with strong GPU acceleration. PyTorch is a deep learning framework that puts Python first.
PyTorch 1.7.1 broadwell, skylake iris Development Tensors and Dynamic neural networks in Python with strong GPU acceleration. PyTorch is a deep learning framework that puts Python first.
PyYAML 5.1.2 broadwell, skylake, gpu iris Libraries PyYAML is a YAML parser and emitter for the Python programming language.
Python 2.7.16 broadwell, skylake, gpu iris Programming Languages Python is a programming language that lets you work more quickly and integrate your systems more effectively.
Python 3.7.4 broadwell, skylake, gpu iris Programming Languages Python is a programming language that lets you work more quickly and integrate your systems more effectively.
Qt5 5.13.1 broadwell, skylake iris Development Qt is a comprehensive cross-platform C++ application framework.
QuantumESPRESSO 6.7 broadwell iris Chemistry Quantum ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials (both norm-conserving and ultrasoft).
R 3.6.2 broadwell, skylake, gpu iris Programming Languages R is a free software environment for statistical computing and graphics.
ReFrame 2.21 broadwell, skylake iris Development ReFrame is a framework for writing regression tests for HPC systems.
Ruby 2.7.1 broadwell, skylake iris Programming Languages Ruby is a dynamic, open source programming language with a focus on simplicity and productivity. It has an elegant syntax that is natural to read and easy to write.
Rust 1.37.0 broadwell, skylake iris Programming Languages Rust is a systems programming language that runs blazingly fast, prevents segfaults, and guarantees thread safety.
SAMtools 1.10 broadwell, skylake iris Biology SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.
SCOTCH 6.0.9 broadwell, skylake iris Mathematics Software package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.
SIONlib 1.7.6 broadwell, skylake iris Libraries SIONlib is a scalable I/O library for parallel access to task-local files. The library not only supports writing and reading binary data to or from several thousands of processors into a single or a small number of physical files, but also provides global open and close functions to access SIONlib files in parallel. This package provides a stripped-down installation of SIONlib for use with performance tools (e.g., Score-P), with renamed symbols to avoid conflicts when an application using SIONlib itself is linked against a tool requiring a different SIONlib version.
SQLite 3.29.0 broadwell, skylake, gpu iris Development SQLite: SQL Database Engine in a C Library
SWIG 4.0.1 broadwell, skylake, gpu iris Development SWIG is a software development tool that connects programs written in C and C++ with a variety of high-level programming languages.
Salmon 1.1.0 broadwell, skylake iris Biology Salmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimates from RNA-seq data.
Salome 8.5.0 broadwell, skylake iris CFD/Finite element modelling The SALOME platform is an open source software framework for pre- and post-processing and integration of numerical solvers from various scientific fields. CEA and EDF use SALOME to perform a large number of simulations, typically related to power plant equipment and alternative energy. To address these challenges, SALOME includes a CAD/CAE modelling tool, mesh generators, an advanced 3D visualization tool, etc.
ScaLAPACK 2.0.2 broadwell, skylake, gpu iris Numerical libraries The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.
Scalasca 2.5 broadwell, skylake iris Performance measurements Scalasca is a software tool that supports the performance optimization of parallel programs by measuring and analyzing their runtime behavior. The analysis identifies potential performance bottlenecks -- in particular those concerning communication and synchronization -- and offers guidance in exploring their causes.
SciPy-bundle 2019.10 broadwell, skylake, gpu iris Programming Languages Bundle of Python packages for scientific software
Score-P 6.0 broadwell, skylake iris Performance measurements The Score-P measurement infrastructure is a highly scalable and easy-to-use tool suite for profiling, event tracing, and online analysis of HPC applications.
Singularity 3.6.0 broadwell, skylake iris Utilities SingularityCE is an open source container platform designed to be simple, fast, and secure. Singularity is optimized for EPC and HPC workloads, allowing untrusted users to run untrusted containers in a trusted way.
Spack 0.12.1 broadwell, skylake iris Development Spack is a package manager for supercomputers, Linux, and macOS. It makes installing scientific software easy. With Spack, you can build a package with multiple versions, configurations, platforms, and compilers, and all of these builds can coexist on the same machine.
Spark 2.4.3 broadwell, skylake iris Development Spark is Hadoop MapReduce done in memory
Sumo 1.3.1 broadwell, skylake iris Utilities Sumo is an open source, highly portable, microscopic and continuous traffic simulation package designed to handle large road networks.
Szip 2.1.1 broadwell, skylake, gpu iris Utilities Szip compression software, providing lossless compression of scientific data
Tcl 8.6.9 broadwell, skylake, gpu iris Programming Languages Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.
TensorFlow 1.15.5 gpu iris Libraries An open-source software library for Machine Intelligence
TensorFlow 2.1.0 gpu iris Libraries An open-source software library for Machine Intelligence
Theano 1.0.4 gpu iris Mathematics Theano is a Python library that allows you to define, optimize, and evaluate mathematical expressions involving multi-dimensional arrays efficiently.
Tk 8.6.9 broadwell, skylake, gpu iris Visualisation Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages.
Tkinter 3.7.4 broadwell, skylake iris Programming Languages Tkinter module, built with the Python buildsystem
TopHat 2.1.2 broadwell, skylake iris Biology TopHat is a fast splice junction mapper for RNA-Seq reads.
Trinity 2.10.0 broadwell, skylake iris Biology Trinity represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-Seq data. Trinity combines three independent software modules: Inchworm, Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-Seq reads.
UDUNITS 2.2.26 broadwell, skylake, gpu iris Physics UDUNITS supports conversion of unit specifications between formatted and binary forms, arithmetic manipulation of units, and conversion of values between compatible scales of measurement.
ULHPC-bio 2019b broadwell, skylake iris System-level software Generic Module bundle for Bioinformatics, biology and biomedical software in use on the UL HPC Facility, especially at LCSB
ULHPC-cs 2019b broadwell, skylake iris System-level software Generic Module bundle for Computational science software in use on the UL HPC Facility, including: - Computer Aided Engineering, incl. CFD - Chemistry, Computational Chemistry and Quantum Chemistry - Data management & processing tools - Earth Sciences - Quantum Computing - Physics and physical systems simulations
ULHPC-dl 2019b broadwell, skylake iris System-level software Generic Module bundle for (CPU-version) of AI / Deep Learning / Machine Learning software in use on the UL HPC Facility
ULHPC-gpu 2019b gpu iris System-level software Generic Module bundle for GPU accelerated User Software in use on the UL HPC Facility
ULHPC-math 2019b broadwell, skylake iris System-level software Generic Module bundle for High-level mathematical software and Linear Algrebra libraries in use on the UL HPC Facility
ULHPC-toolchains 2019b broadwell, skylake iris System-level software Generic Module bundle that contains all the dependencies required to enable toolchains and building tools/programming language in use on the UL HPC Facility
ULHPC-tools 2019b broadwell, skylake iris System-level software Misc tools, incl. - perf: Performance tools - tools: General purpose tools
VASP 5.4.4 broadwell, skylake iris Physics The Vienna Ab initio Simulation Package (VASP) is a computer program for atomic scale materials modelling, e.g. electronic structure calculations and quantum-mechanical molecular dynamics, from first principles.
VTK 8.2.0 broadwell, skylake iris Visualisation The Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image processing and visualization. VTK consists of a C++ class library and several interpreted interface layers including Tcl/Tk, Java, and Python. VTK supports a wide variety of visualization algorithms including: scalar, vector, tensor, texture, and volumetric methods; and advanced modeling techniques such as: implicit modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay triangulation.
VTune 2019_update8 broadwell, skylake iris Utilities Intel VTune Amplifier XE is the premier performance profiler for C, C++, C#, Fortran, Assembly and Java.
Valgrind 3.15.0 broadwell, skylake iris Debugging Valgrind: Debugging and profiling tools
VirtualGL 2.6.2 broadwell, skylake iris Visualisation VirtualGL is an open source toolkit that gives any Linux or Unix remote display software the ability to run OpenGL applications with full hardware acceleration.
Voro++ 0.4.6 broadwell, skylake iris Mathematics Voro++ is a software library for carrying out three-dimensional computations of the Voronoi tessellation. A distinguishing feature of the Voro++ library is that it carries out cell-based calculations, computing the Voronoi cell for each particle individually. It is particularly well-suited for applications that rely on cell-based statistics, where features of Voronoi cells (eg. volume, centroid, number of faces) can be used to analyze a system of particles.
X11 20190717 broadwell, skylake, gpu iris Visualisation The X Window System (X11) is a windowing system for bitmap displays
XML-LibXML 2.0201 broadwell, skylake iris Data processing Perl binding for libxml2
XZ 5.2.4 broadwell, skylake, gpu iris Utilities xz: XZ utilities
Xerces-C++ 3.2.2 broadwell, skylake iris Libraries Xerces-C++ is a validating XML parser written in a portable subset of C++. Xerces-C++ makes it easy to give your application the ability to read and write XML data. A shared library is provided for parsing, generating, manipulating, and validating XML documents using the DOM, SAX, and SAX2 APIs.
Yasm 1.3.0 broadwell, skylake, gpu iris Programming Languages Yasm: Complete rewrite of the NASM assembler with BSD license
Zip 3.0 broadwell, skylake, gpu iris Utilities Zip is a compression and file packaging/archive utility. Although highly compatible both with PKWARE's PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP's own UnZip, our primary objectives have been portability and other-than-MSDOS functionality
ant 1.10.6 broadwell, skylake iris Development Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other. The main known usage of Ant is the build of Java applications.
ant 1.10.7 broadwell, skylake iris Development Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other. The main known usage of Ant is the build of Java applications.
archspec 0.1.0 broadwell, skylake iris Utilities A library for detecting, labeling, and reasoning about microarchitectures
arpack-ng 3.7.0 broadwell, skylake iris Numerical libraries ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.
at-spi2-atk 2.34.1 broadwell, skylake iris Visualisation AT-SPI 2 toolkit bridge
at-spi2-core 2.34.0 broadwell, skylake iris Visualisation Assistive Technology Service Provider Interface.
binutils 2.32 broadwell, skylake, gpu iris Utilities binutils: GNU binary utilities
bzip2 1.0.8 broadwell, skylake, gpu iris Utilities bzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.
cURL 7.66.0 broadwell, skylake, gpu iris Utilities libcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more.
cairo 1.16.0 broadwell, skylake, gpu iris Visualisation Cairo is a 2D graphics library with support for multiple output devices. Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB
cuDNN 7.6.4.38 gpu iris Numerical libraries The NVIDIA CUDA Deep Neural Network library (cuDNN) is a GPU-accelerated library of primitives for deep neural networks.
double-conversion 3.1.4 broadwell, skylake, gpu iris Libraries Efficient binary-decimal and decimal-binary conversion routines for IEEE doubles.
expat 2.2.7 broadwell, skylake, gpu iris Utilities Expat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start tags)
flatbuffers 1.12.0 broadwell, skylake, gpu iris Development FlatBuffers: Memory Efficient Serialization Library
flex 2.6.4 broadwell, skylake, gpu iris Programming Languages Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.
fontconfig 2.13.1 broadwell, skylake, gpu iris Visualisation Fontconfig is a library designed to provide system-wide font configuration, customization and application access.
foss 2019b broadwell, skylake iris Toolchains (software stacks) GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.
fosscuda 2019b gpu iris Toolchains (software stacks) GCC based compiler toolchain with CUDA support, and including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.
freetype 2.10.1 broadwell, skylake, gpu iris Visualisation FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display servers, font conversion tools, text image generation tools, and many other products as well.
gc 7.6.12 broadwell, skylake iris Libraries The Boehm-Demers-Weiser conservative garbage collector can be used as a garbage collecting replacement for C malloc or C++ new.
gcccuda 2019b gpu iris Toolchains (software stacks) GNU Compiler Collection (GCC) based compiler toolchain, along with CUDA toolkit.
gettext 0.19.8.1 broadwell, skylake, gpu iris Utilities GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation
gettext 0.20.1 broadwell, skylake, gpu iris Utilities GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation
gflags 2.2.2 broadwell, skylake iris Development The gflags package contains a C++ library that implements commandline flags processing. It includes built-in support for standard types such as string and the ability to define flags in the source file in which they are used.
giflib 5.2.1 broadwell, skylake, gpu iris Libraries giflib is a library for reading and writing gif images. It is API and ABI compatible with libungif which was in wide use while the LZW compression algorithm was patented.
git 2.23.0 broadwell, skylake, gpu iris Utilities Git is a free and open source distributed version control system designed to handle everything from small to very large projects with speed and efficiency.
glog 0.4.0 broadwell, skylake iris Development A C++ implementation of the Google logging module.
gmsh 4.4.0 broadwell, skylake iris CFD/Finite element modelling Salome is an open-source software that provides a generic Pre- and Post-Processing platform for numerical simulation. It is based on an open and flexible architecture made of reusable components.
gnuplot 5.2.8 broadwell, skylake iris Visualisation Portable interactive, function plotting utility
gocryptfs 1.7.1 broadwell, skylake iris Utilities Encrypted overlay filesystem written in Go. gocryptfs uses file-based encryption that is implemented as a mountable FUSE filesystem. Each file in gocryptfs is stored as one corresponding encrypted file on the hard disk.
gompi 2019b broadwell, skylake iris Toolchains (software stacks) GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support.
gompic 2019b gpu iris Toolchains (software stacks) GNU Compiler Collection (GCC) based compiler toolchain along with CUDA toolkit, including OpenMPI for MPI support with CUDA features enabled.
googletest 1.10.0 broadwell, skylake iris Development Google's framework for writing C++ tests on a variety of platforms
gperf 3.1 broadwell, skylake, gpu iris Development GNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single string comparison only.
gzip 1.10 broadwell, skylake iris Utilities gzip (GNU zip) is a popular data compression program as a replacement for compress
h5py 2.10.0 broadwell, skylake, gpu iris Data processing HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous amounts of data.
help2man 1.47.4 broadwell, skylake, gpu iris Utilities help2man produces simple manual pages from the '--help' and '--version' output of other commands.
help2man 1.47.8 broadwell, skylake, gpu iris Utilities help2man produces simple manual pages from the '--help' and '--version' output of other commands.
hwloc 1.11.12 broadwell, skylake, gpu iris System-level software The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently.
hypothesis 4.44.2 broadwell, skylake, gpu iris Utilities Hypothesis is an advanced testing library for Python. It lets you write tests which are parametrized by a source of examples, and then generates simple and comprehensible examples that make your tests fail. This lets you find more bugs in your code with less work.
iccifort 2019.5.281 broadwell, skylake, gpu iris Compilers Intel C, C++ & Fortran compilers
iccifortcuda 2019b gpu iris Toolchains (software stacks) Intel C, C++ & Fortran compilers with CUDA toolkit
iimpi 2019b broadwell, skylake iris Toolchains (software stacks) Intel C/C++ and Fortran compilers, alongside Intel MPI.
iimpic 2019b gpu iris Toolchains (software stacks) Intel C/C++ and Fortran compilers, alongside Intel MPI and CUDA.
imkl 2019.5.281 broadwell, skylake, gpu iris Numerical libraries Intel Math Kernel Library is a library of highly optimized, extensively threaded math routines for science, engineering, and financial applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.
impi 2018.5.288 broadwell, skylake, gpu iris MPI Intel MPI Library, compatible with MPICH ABI
intel 2019b broadwell, skylake iris Toolchains (software stacks) Compiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Library (MKL).
intelcuda 2019b gpu iris Toolchains (software stacks) Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MPI & Intel MKL, with CUDA toolkit
intltool 0.51.0 broadwell, skylake, gpu iris Development intltool is a set of tools to centralize translation of many different file formats using GNU gettext-compatible PO files.
itac 2019.4.036 broadwell, skylake iris Utilities The Intel Trace Collector is a low-overhead tracing library that performs event-based tracing in applications. The Intel Trace Analyzer provides a convenient way to monitor application activities gathered by the Intel Trace Collector through graphical displays.
jemalloc 5.2.1 broadwell, skylake iris Libraries jemalloc is a general purpose malloc(3) implementation that emphasizes fragmentation avoidance and scalable concurrency support.
kallisto 0.46.1 broadwell, skylake iris Biology kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads.
kim-api 2.1.3 broadwell, skylake iris Chemistry Open Knowledgebase of Interatomic Models. KIM is an API and OpenKIM is a collection of interatomic models (potentials) for atomistic simulations. This is a library that can be used by simulation programs to get access to the models in the OpenKIM database. This EasyBuild only installs the API, the models can be installed with the package openkim-models, or the user can install them manually by running kim-api-collections-management install user MODELNAME or kim-api-collections-management install user OpenKIM to install them all.
libGLU 9.0.1 broadwell, skylake, gpu iris Visualisation The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL.
libcerf 1.13 broadwell, skylake iris Mathematics libcerf is a self-contained numeric library that provides an efficient and accurate implementation of complex error functions, along with Dawson, Faddeeva, and Voigt functions.
libctl 4.0.0 broadwell, skylake iris Chemistry libctl is a free Guile-based library implementing flexible control files for scientific simulations.
libdrm 2.4.99 broadwell, skylake, gpu iris Libraries Direct Rendering Manager runtime library.
libepoxy 1.5.4 broadwell, skylake iris Libraries Epoxy is a library for handling OpenGL function pointer management for you
libevent 2.1.11 broadwell, skylake iris Libraries The libevent API provides a mechanism to execute a callback function when a specific event occurs on a file descriptor or after a timeout has been reached. Furthermore, libevent also support callbacks due to signals or regular timeouts.
libffi 3.2.1 broadwell, skylake, gpu iris Libraries The libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-time.
libgd 2.2.5 broadwell, skylake iris Libraries GD is an open source code library for the dynamic creation of images by programmers.
libgeotiff 1.5.1 broadwell, skylake, gpu iris Libraries Library for reading and writing coordinate system information from/to GeoTIFF files
libglvnd 1.2.0 broadwell, skylake iris Libraries libglvnd is a vendor-neutral dispatch layer for arbitrating OpenGL API calls between multiple vendors.
libgpuarray 0.7.6 gpu iris Libraries Library to manipulate tensors on the GPU.
libiconv 1.16 broadwell, skylake, gpu iris Libraries Libiconv converts from one character encoding to another through Unicode conversion
libjpeg-turbo 2.0.3 broadwell, skylake, gpu iris Libraries libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding.
libmatheval 1.1.11 broadwell, skylake iris Libraries GNU libmatheval is a library (callable from C and Fortran) to parse and evaluate symbolic expressions input as text.
libpciaccess 0.14 broadwell, skylake, gpu iris System-level software Generic PCI access library.
libpng 1.6.37 broadwell, skylake, gpu iris Libraries libpng is the official PNG reference library
libreadline 8.0 broadwell, skylake, gpu iris Libraries The GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.
libsndfile 1.0.28 broadwell, skylake, gpu iris Libraries Libsndfile is a C library for reading and writing files containing sampled sound (such as MS Windows WAV and the Apple/SGI AIFF format) through one standard library interface.
libtool 2.4.6 broadwell, skylake, gpu iris Libraries GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.
libunistring 0.9.10 broadwell, skylake iris Libraries This library provides functions for manipulating Unicode strings and for manipulating C strings according to the Unicode standard.
libunwind 1.3.1 broadwell, skylake, gpu iris Libraries The primary goal of libunwind is to define a portable and efficient C programming interface (API) to determine the call-chain of a program. The API additionally provides the means to manipulate the preserved (callee-saved) state of each call-frame and to resume execution at any point in the call-chain (non-local goto). The API supports both local (same-process) and remote (across-process) operation. As such, the API is useful in a number of applications
libxc 4.3.4 broadwell, skylake iris Chemistry Libxc is a library of exchange-correlation functionals for density-functional theory. The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.
libxml2 2.9.9 broadwell, skylake, gpu iris Libraries Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform).
libxslt 1.1.34 broadwell, skylake iris Libraries Libxslt is the XSLT C library developed for the GNOME project (but usable outside of the Gnome platform).
libyaml 0.2.2 broadwell, skylake, gpu iris Libraries LibYAML is a YAML parser and emitter written in C.
lxml 4.4.2 broadwell, skylake iris Libraries The lxml XML toolkit is a Pythonic binding for the C libraries libxml2 and libxslt.
magma 2.5.1 gpu iris Mathematics The MAGMA project aims to develop a dense linear algebra library similar to LAPACK but for heterogeneous/hybrid architectures, starting with current Multicore+GPU systems.
magma 2.5.4 gpu iris Mathematics The MAGMA project aims to develop a dense linear algebra library similar to LAPACK but for heterogeneous/hybrid architectures, starting with current Multicore+GPU systems.
matplotlib 3.1.1 broadwell, skylake iris Visualisation matplotlib is a python 2D plotting library which produces publication quality figures in a variety of hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python and ipython shell, web application servers, and six graphical user interface toolkits.
molmod 1.4.5 broadwell, skylake iris Mathematics MolMod is a Python library with many compoments that are useful to write molecular modeling programs.
ncurses 6.0 broadwell, skylake, gpu iris Development The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.
ncurses 6.1 broadwell, skylake, gpu iris Development The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.
netCDF-Fortran 4.5.2 broadwell, skylake iris Data processing NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.
netCDF 4.7.1 broadwell, skylake, gpu iris Data processing NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.
nettle 3.5.1 broadwell, skylake, gpu iris Libraries Nettle is a cryptographic library that is designed to fit easily in more or less any context: In crypto toolkits for object-oriented languages (C++, Python, Pike, ...), in applications like LSH or GNUPG, or even in kernel space.
nsync 1.24.0 broadwell, skylake, gpu iris Development nsync is a C library that exports various synchronization primitives, such as mutexes
numactl 2.0.12 broadwell, skylake, gpu iris Utilities The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.
phonopy 2.2.0 broadwell, skylake iris Libraries Phonopy is an open source package of phonon calculations based on the supercell approach.
pixman 0.38.4 broadwell, skylake, gpu iris Visualisation Pixman is a low-level software library for pixel manipulation, providing features such as image compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X server.
pkg-config 0.29.2 broadwell, skylake, gpu iris Development pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the correct compiler options on the command line so an application can use gcc -o test test.c pkg-config --libs --cflags glib-2.0 for instance, rather than hard-coding values on where to find glib (or other libraries).
pkgconfig 1.5.1 broadwell, skylake, gpu iris Development pkgconfig is a Python module to interface with the pkg-config command line tool
pocl 1.4 gpu iris Libraries Pocl is a portable open source (MIT-licensed) implementation of the OpenCL standard
protobuf-python 3.10.0 broadwell, skylake, gpu iris Development Python Protocol Buffers runtime library.
protobuf 2.5.0 broadwell, skylake iris Development Google Protocol Buffers
protobuf 3.10.0 broadwell, skylake iris Development Google Protocol Buffers
pybind11 2.4.3 broadwell, skylake, gpu iris Libraries pybind11 is a lightweight header-only library that exposes C++ types in Python and vice versa, mainly to create Python bindings of existing C++ code.
re2c 1.2.1 broadwell, skylake iris Utilities re2c is a free and open-source lexer generator for C and C++. Its main goal is generating fast lexers: at least as fast as their reasonably optimized hand-coded counterparts. Instead of using traditional table-driven approach, re2c encodes the generated finite state automata directly in the form of conditional jumps and comparisons.
scipy 1.4.1 broadwell, skylake, gpu iris Mathematics SciPy is a collection of mathematical algorithms and convenience functions built on the Numpy extension for Python.
setuptools 41.0.1 broadwell, skylake iris Development Easily download, build, install, upgrade, and uninstall Python packages
snappy 1.1.7 broadwell, skylake, gpu iris Libraries Snappy is a compression/decompression library. It does not aim for maximum compression, or compatibility with any other compression library; instead, it aims for very high speeds and reasonable compression.
sparsehash 2.0.3 broadwell, skylake iris Development An extremely memory-efficient hash_map implementation. 2 bits/entry overhead! The SparseHash library contains several hash-map implementations, including implementations that optimize for space or speed.
tbb 2019_U9 broadwell, skylake iris Libraries Intel(R) Threading Building Blocks (Intel(R) TBB) lets you easily write parallel C++ programs that take full advantage of multicore performance, that are portable, composable and have future-proof scalability.
tbb 2020.2 broadwell, skylake iris Libraries Intel(R) Threading Building Blocks (Intel(R) TBB) lets you easily write parallel C++ programs that take full advantage of multicore performance, that are portable, composable and have future-proof scalability.
texinfo 6.7 broadwell, skylake iris Development Texinfo is the official documentation format of the GNU project.
typing-extensions 3.7.4.3 gpu iris Development Typing Extensions – Backported and Experimental Type Hints for Python
util-linux 2.34 broadwell, skylake, gpu iris Utilities Set of Linux utilities
x264 20190925 broadwell, skylake, gpu iris Visualisation x264 is a free software library and application for encoding video streams into the H.264/MPEG-4 AVC compression format, and is released under the terms of the GNU GPL.
x265 3.2 broadwell, skylake, gpu iris Visualisation x265 is a free software library and application for encoding video streams into the H.265 AVC compression format, and is released under the terms of the GNU GPL.
xorg-macros 1.19.2 broadwell, skylake, gpu iris Development X.org macros utilities.
xprop 1.2.4 broadwell, skylake iris Visualisation The xprop utility is for displaying window and font properties in an X server. One window or font is selected using the command line arguments or possibly in the case of a window, by clicking on the desired window. A list of properties is then given, possibly with formatting information.
yaff 1.6.0 broadwell, skylake iris Chemistry Yaff stands for 'Yet another force field'. It is a pythonic force-field code.
zlib 1.2.11 broadwell, skylake, gpu iris Libraries zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system.

Last update: April 29, 2022